Class FieldGenotype

java.lang.Object
org.snpsift.lang.expression.Expression
org.snpsift.lang.expression.Field
org.snpsift.lang.expression.FieldSub
org.snpsift.lang.expression.FieldGenotype
Direct Known Subclasses:
FieldGenotypeSub
public class FieldGenotype extends FieldSub
A field: E.g.: 'GEN[2].GT'
Author:
pablocingolani

  • Constructor Details

  • Method Details

    • evalGenotype

      protected org.snpeff.vcf.VcfGenotype evalGenotype(org.snpeff.vcf.VcfEntry vcfEntry)
      Evaluate expressions and return VcfGenotype

    • getFieldString

      public String getFieldString(org.snpeff.vcf.VcfEntry vcfEntry)
      Get a field from VcfEntry
      Overrides:
      getFieldString in class FieldSub

    • getFieldString

      public String getFieldString(org.snpeff.vcf.VcfGenotype vcfGenotype)
      Get a field (as a Float) from VcfEntry
      Overrides:
      getFieldString in class FieldSub

    • isSub

      protected boolean isSub()
      Overrides:
      isSub in class FieldSub

    • toString

      public String toString()
      Overrides:
      toString in class FieldSub