T-COFFEE, Version_11.00 (Version_11.00)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=953
*
 BAD AVG GOOD
*
hmgb_chite   :  93
hmgt_mouse   :  93
hmgl_wheat   :  93
hmgl_trybr   :  93
1cms         :  93
4pep         :  93
4ape         :  93
3app         :  93
2apr         :  93
1cms_1       :  93
1cms         :  97
4pep         :  97
4ape         :  97
3app         :  97
2apr         :  97
1cms_1       :  97
cons         :  95

hmgb_chite   ad---kpkrplsay------m---------------lwlnsaresi------------------krenpdf-kvtevak-kggelwr------------------------------glk--dksewe----------------------
hmgt_mouse   k-----pkrprsay------n---------------iyvsesfqea----------------------kdd-saqgklk-lvneawk------------------------------nlspeekqayi----------------------
hmgl_wheat   dp--nkpkrapsaf------f---------------vfmgefreef------------------kqknpknksvaavgk-aagerwk------------------------------slsesekapyv----------------------
hmgl_trybr   kkdsnapkramtsf------m---------------ffssdfrskh----------------------sdl-sivemsk-aagaawk------------------------------elgpeerkvye----------------------
1cms         GE---VASVPLTNY------LDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSS---TFQ-NLGKPLSIHYGTGS-MQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFD--------GILGMAYP
4pep         -----IGDEPLENY------LDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSS---TFE-ATSQELSITYGTGS-MTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFD--------GILGLAYP
4ape         STG-SATTTPIDS-------LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKST---TAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTID--------GLLGLAFS
3app         AASGVATNTPTA--------NDEEYITPVTIGG--TTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSA-----TGKELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNND--------GLLGLAFS
2apr         AG---VGTVPMTDYG-----NDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTN-CGSGQTKYDPNQSS---TYQ-ADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAASFAS-GPND--------GLLGLGFD
1cms_1       YTG-SLHWVPVTVQQYWQFTVDSVTISGVVVACEG-GCQAILDTGTSKLVGPSS------------------------------------------------------DILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYP
1cms         --GEVASVPLT-------NYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPR-KSS---TFQNLGKPLSIHYGTG-SMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFD--------GILGMAYP
4pep         ----IGDEPLE-------NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPD-DSS---TFEATSQELSITYGTG-SMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFD--------GILGLAYP
4ape         -STGSATTTPI-------DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTT---AKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTID--------GLLGLAFS
3app         AASGVATNTPT-------AN-DEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNP--SAT---GKELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNND--------GLLGLAFS
2apr         AGVGTVPMTDY-------GN-DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCG-SGQTKYDPN-QSS---TYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAASFASGPN-D--------GLLGLGFD
1cms_1       ------------------------YTGSLHWVPVTVQQYWQFTVDS---VTISGVVVACEGGCQAILDTG-TSK---LVGPSSDILNIQQAIG-ATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTS--------QDQGFCTS

cons                                                                                                                                                               


hmgb_chite   ------------------------aka--at------akqnyiralqeyer--ng-----------g
hmgt_mouse   ------------------------qla--kd------drirydnemkswee--qm--a--------e
hmgl_wheat   ------------------------aka--nk------lkgeynkaiaaynk--ge--s--------a
hmgl_trybr   ------------------------ema--ek------dkerykrem---------------------
1cms         SLASEY---SIPV--------F--DNMMNRH----LVAQDLFSVYM-DRNG--QESMLTLGAIDPSY
4pep         SISASG---ATPV--------F--DNLWDQG----LVSQDLFSVYL-SSNDD-SGSVVLLGGIDSSY
4ape         TLNTVSPTQQKTF--------F--DNA--KA----SLDSPVFTADL-GYH---APGTYNFGFIDTTA
3app         SINTVQPQSQTTF--------F--DTV--KS----SLAQPLFAVAL-KHQ---QPGVYDFGFIDSSK
2apr         TITTVRG--VKTP--------M--DNLISQG----LISRPIFGVYL-GKAKNGGGGEYIFGGYDSTK
1cms_1       LTPSAY---TS-QDQGFCTSGFQSENHSQKWILGDVFIREYYSVFD-RANN--LVGLA--KAI----
1cms         SLASEY---SIPVFDNM--------------MNRHLVAQDLFSVYMDR-NGQE--SMLTLGAIDPSY
4pep         SISASG---ATPVFDNL--------------WDQGLVSQDLFSVYLSS-NDDSG-SVVLLGGIDSSY
4ape         TLNTVSPTQQKTFFDNA--------------KAS--LDSPVFTADLGY-HAPG---TYNFGFIDTTA
3app         SINTVQPQSQTTFFDTV--------------KSS--LAQPLFAVALKH-QQPG---VYDFGFIDSSK
2apr         TITTVR--GVKTPMDNL--------------ISQGLISRPIFGVYLGK-AKNGGGGEYIFGGYDSTK
1cms_1       GFQSEN------HSQKW--------------ILGDVFIREYYSVFDRA-NNLVG----LAKAI----

cons                                                  :